![]() When a given preset is selected, jobs are sent to the corresponding AWS Batch queue.īy default, all cloud presets are available for all users of the CLC Server. Each preset is configured with the name of a single AWS Batch queue. When submitting a job to a CLC Genomics Cloud setup via a CLC Server, the submitter specifies a cloud preset to use. This sections describes the configuration of cloud presets. The CLC Genomics Cloud is a combination of AWS resources and CLC software that supports running analyses submitted by a CLC Workbench or CLC Server on AWS EC2 instances and storing results on AWS S3. Logging in using SSL from the CLC Server Command Line Tools.Logging in using SSL from the Workbench.Browse a CLC Server import/export directory.Using CLC Server Command Line Tools to launch external applications.Using a CLC Workbench to launch external applications.Configure a containerized MAFFT external application.Upload the Docker image to a repository.Example: MAFFT (containerized external application).Understanding the Bowtie Map configuration.Example: Bowtie (standard external application).Example: Velvet (standard external application).Updating external application configurations.Import and export of external application configurations.Using consistent reference data in external applications.High-throughput sequencing import / Post-processing.Configuring the containerized execution environment.Downloading a license via the web interface.Adding directories for BLAST databases on the Server.Direct data transfer from client systems.Access to files outside CLC Server Locations.Client-side: starting CLC jobs on the grid.Controlling the number of cores utilized.Configuring licenses as a consumable resource.Model II: Master server submitting to grid nodes.User credentials on a master-job node setup.Model I: Master server with dedicated job nodes.What happens when a clc object is copied to another data location?.Customized attributes on data locations.Controlling access to the server, server tasks and external data.Technical notes about permissions and security.Controlling group access to CLC Server data.User authentication via the Workbench for built-in authentication.Managing users and groups using built-in authentication.User authentication using the web interface.Logging in the first time and changing the root password.Deployment of server information to CLC Workbenches.Limiting the number of cpus available for use.Setting the amount of memory available for the JVM.Enabling and disabling internal compression of CLC data.Logging into the administrative interface.Download a static license on a non-networked machine.Installation modes - console and silent.
0 Comments
Leave a Reply. |